species:   Scscl
pid:       PID1529
parent:    Ssc-milR-5
paralog:   
locus:     NC_035155.1:14916-15006
matures:   ['UAUUUGCUUAAGGUAUAGUCAG', 'GGCCAACCUAAGGGAAUAAA']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NC_035155.1:14916-15006

10 out of bounds
18 alignments
14 proper strand
9 stranded perfect matches

           ************************              *****************************             
GGACAAAAAUUAUUUGCUUAAGGUAUAGUCAGGCAUAACCAAAAAGUUAUGGGAAUACCCUGGCCAACCUAAGGGAAUAAAUAAAAUUCCU
(((......((((((.((((.(((...((((((((((((......)))))).......))))))..))))))).)))))).......))).
----------UAUUUGCUUAAGGUAUAGUCAG----------------------------------------------------------- l=22 a=0 c
-------------------------------------------------------------GGCCAACCUAAGGGAAUAAA---------- l=20 a=0 c*
-------------UUGCUUAAGGUAUAGUCAGGCA-------------------------------------------------------- l=22 a=2 ma
---------------------------------------------------GGAAUACCCUGGCCAACCUAAGGGAAU------------- l=27 a=0 ma*

-------------UUGCUUAAGGUAUAGUCAGGCA-------------------------------------------------------- l=22 a=2 (ma)
--------------UGCUUAAGGUAUAGUCAGGaA-------------------------------------------------------- l=21 a=1 
--------------UGCUUAAGGUAUAGUCAGGCAUA------------------------------------------------------ l=23 a=2 
--------------------AGGUAUAGUCAGGCAUAAa---------------------------------------------------- l=19 a=1 
--------------------AGGUAUAGUCAGGCAUAACCAA------------------------------------------------- l=22 a=1 
----------------------GUAUAGUCAGGCAUAACCAA------------------------------------------------- l=20 a=1 
----------------------GUAUAGUCAGGCAUAACCAuA------------------------------------------------ l=21 a=1 
----------------------GUAUAGUCAGGCAUAACCAAu------------------------------------------------ l=21 a=1 
----------------------------UCAGGCAUAACCAAAAAGUUAa----------------------------------------- l=22 a=1 
----------------------------------------------UUAUGGGAAUACCCUGGCCAACC---------------------- l=23 a=1 
----------------------------------------------------GAAUACCCUGGCCAACCUAA------------------- l=20 a=1 
-------------------------------------------------------UACCCUGGCCAACCUAAGGGA--------------- l=21 a=1 

mb-00011
ax-1001011
ku-01
ss-111110101000
fn-101
